There is another thread that deals with the COA issue. I read that they were all sent out late but you should be able to get it from your dealer soon if not now.
As for the quality, when you drop a couple G's on a guitar you should take a little longer to inspect it. I'm sure by now you've thought of that.
It is easy to get so wrapped up in the purchase excitement that the little details can get overlooked.
If the flaws are too great to deal with, return it. The last feeling you want to associate with your new "limb" is regret.
Oh, and don't forget the pics.